PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10009768m
Common NameCICLE_v10009768mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 159aa    MW: 17283 Da    PI: 8.1312
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10009768mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00014769123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C + F ++  L  H++ H
  Ciclev10009768m 47 FSCNYCQRKFYSSQALGGHQNAH 69
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.7E-64474No hitNo description
PROSITE profilePS5015711.0944774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MDYQPNTSLH LSLPSNQLNL DLVLEPSPSS NCSSPSPHSP AAEPRIFSCN YCQRKFYSSQ  60
ALGGHQNAHK LERTLAKKSK EFSSAVRAHG VSNNPRSGSS SIGSSSHASR IHQGHAHAGK  120
FAGEFDYGIR EVNYSSMSYS PHENVQDELS QLDLSLRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453394.11e-112hypothetical protein CICLE_v10009768mg
RefseqXP_006474166.11e-112PREDICTED: zinc finger protein 2
RefseqXP_015384422.11e-112PREDICTED: zinc finger protein 2
SwissprotQ392613e-36ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A067E5K51e-112A0A067E5K5_CITSI; Uncharacterized protein
TrEMBLV4WIT31e-112V4WIT3_9R
STRINGPOPTR_0006s18540.15e-50(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66212844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.13e-32zinc finger protein 2